SAMN01761516

EXTERNAL

Sample

Accession

SAMN01761516

Alias

HG04075

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual HG04075

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:3014G>A

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
M
chrM:14206T>C, chrM:14466G>A, chrM:16482T>C, chrM:9823C>T
M36
chrM:14533G>A, chrM:16143C>T, chrM:16231T>C, chrM:6694A>G
chrM:274T>C
chrM:11725C>T, chrM:14304C>T, chrM:14916C>T, chrM:15518C>T, chrM:1804C>T, chrM:274T>C, chrM:3257G>A, chrM:3288A>G, chrM:4061A>G, chrM:5743T>C
chrM:5266A>G [Node511]
chrM:10488A>G, chrM:11771C>T, chrM:5266A>G, chrM:7488G>A
chrM:3014G>A
chrM:15157G>A, chrM:15515T>C, chrM:15518C>T, chrM:3014G>A

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 832813342 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG04075.final.cram	CRAM	—	GRCh38	bwa mem	6158a39e361961657a9998fb77defb30	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.