SAMN01096783

EXTERNAL

Sample

Accession

SAMN01096783

Alias

HG03790

Sex

Male

Center

NYGC

Description

Human 1000 genomes individual HG03790

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway R5a1a

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
R5
chrM:10177A>G, chrM:13967G>A, chrM:15947A>G, chrM:8017T>C
R5a
R5a1
chrM:16085A>G, chrM:16192A>G, chrM:2257A>G
R5a1a
chrM:15689C>T, chrM:8410T>C, chrM:9131T>C, chrM:9507T>C

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 749699474 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG03790.final.cram	CRAM	—	GRCh38	bwa mem	ee3beab9d673905942813b6b05d7c99d	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.