SAMN01090956

EXTERNAL

Sample

Accession

SAMN01090956

Alias

HG03829

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual HG03829

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:3289T>C [Node311]

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
U
chrM:10890A>G, chrM:11731A>G, chrM:11795G>A
U2'3'4'7'8'9
chrM:1235A>G
U2
chrM:15474A>G
U2a1
chrM:15629A>C, chrM:15653A>G, chrM:15734T>C
U2a1a
chrM:15052T>C, chrM:15577T>C, chrM:4685G>A, chrM:7995G>A
chrM:3289T>C [Node311]
chrM:10573G>A, chrM:3289T>C, chrM:3736T>C, chrM:6097T>C, chrM:7709T>C, chrM:8404A>G

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 753806310 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG03829.final.cram	CRAM	—	GRCh38	bwa mem	1553dbf04a932d7e1f3f0e730877d5e9	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.