SAMN01090897

EXTERNAL

Sample

Accession

SAMN01090897

Alias

HG03343

Sex

Male

Center

NYGC

Description

Human 1000 genomes individual HG03343

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway L1c3a

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L1
chrM:13212T>C, chrM:13601T>C, chrM:13983G>A, chrM:15716A>G, chrM:16181A>G, chrM:3089G>A, chrM:6478A>G, chrM:6812T>C
L1c
chrM:10009G>A, chrM:12908A>G, chrM:13423T>A, chrM:14334C>T, chrM:15552G>A, chrM:15717C>T, chrM:15783C>T, chrM:16143C>T, chrM:16178C>A, chrM:16181G>C, chrM:16309G>A, chrM:5374A>G, chrM:5494T>C, chrM:7450G>A, chrM:8495A>G
L1c3
chrM:10725C>T, chrM:14649A>G, chrM:15328T>C, chrM:15401C>T, chrM:16187C>T, chrM:5644T>A, chrM:6340G>A, chrM:6478A>G
L1c3a
chrM:11442C>T, chrM:15610T>C, chrM:15638A>G, chrM:15716A>G, chrM:5683G>A, chrM:6921G>A, chrM:7212G>A, chrM:9389G>A

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 997410166 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG03343.final.cram	CRAM	—	GRCh38	bwa mem	a1eee1f8203629760a83b7842d1aff4e	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.