SAMN01090871
EXTERNALSample
- Accession
SAMN01090871- Alias
- HG02976
- Sex
- Female
- Center
- NYGC
- Description
- Human 1000 genomes individual HG02976
- Source publications
Y-DNA pathway
No haplogroup call for this sample.
mtDNA pathway
chrM:6226C>T
From de-novo tree placement
-
L1'2'3'4'5'6'7chrM:16181G>A
-
L2'3'4'5'6'7chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
-
L2'3'4'6chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
-
L3'4chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
-
L3chrM:193A>G, chrM:442A>G
-
L3e'i'k'xchrM:10242A>G
-
L3echrM:13635T>C, chrM:1776T>C
-
L3e1chrM:13575A>G, chrM:15093T>C, chrM:15365T>C, chrM:15750C>T, chrM:15942C>T, chrM:16181A>G, chrM:5644T>C, chrM:6010C>T
-
chrM:16192A>GchrM:16192A>G
-
L3e1achrM:15608C>T
-
chrM:16199G>AchrM:16199G>A
-
chrM:16526A>GchrM:16526A>G
-
chrM:6226C>TchrM:16187T>C, chrM:6226C>T
Origin
No geographic coordinate recorded.
Sequencing & coverage
No sequencing data available.
Sequence data & files
Instrument: Illumina NovaSeq 6000 ·
Layout: PAIRED ·
Reads: 761354010 ·
Read length: 150 ·
Date: 2020-05-14
| File | Format | Size | Reference | Aligner | md5 | |
|---|---|---|---|---|---|---|
| HG02976.final.cram | CRAM | — | GRCh38 | bwa mem | cda70e02ae68fd4082b54388f8999dbe | Download |
Ancestry
No ancestry breakdown available.
Predicted phenotype and genetic-distance metrics are not yet available.