SAMN01090856

EXTERNAL

Sample

Accession

SAMN01090856

Alias

HG03300

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual HG03300

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:6694A>G

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L1
chrM:13212T>C, chrM:13601T>C, chrM:13983G>A, chrM:15716A>G, chrM:16181A>G, chrM:3089G>A, chrM:6478A>G, chrM:6812T>C
L1c
chrM:10009G>A, chrM:12908A>G, chrM:13423T>A, chrM:14334C>T, chrM:15552G>A, chrM:15717C>T, chrM:15783C>T, chrM:16143C>T, chrM:16178C>A, chrM:16181G>C, chrM:16309G>A, chrM:5374A>G, chrM:5494T>C, chrM:7450G>A, chrM:8495A>G
L1c1'2'4'6
chrM:16190C>T, chrM:16289A>G, chrM:9744T>C
L1c2'4
chrM:11472C>T, chrM:15716A>G
L1c2
chrM:10215A>G, chrM:10216C>T, chrM:11077A>G, chrM:12572A>G, chrM:15688A>C, chrM:15709C>G, chrM:15950C>T, chrM:5573G>A, chrM:5676T>C, chrM:6499A>G, chrM:6760G>A, chrM:8207A>G, chrM:8300T>C
L1c2b1a'b
chrM:10587A>G, chrM:1644A>G, chrM:9454T>C
chrM:6694A>G
chrM:13815C>T, chrM:14571G>A, chrM:15352A>G, chrM:6694A>G, chrM:8091T>C

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 743693234 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG03300.final.cram	CRAM	—	GRCh38	bwa mem	49870f5a0087c063bd33a622e92f23a3	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.