SAMN01090807

EXTERNAL

Sample

Accession

SAMN01090807

Alias

HG03458

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual HG03458

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:133G>A [Node1843]

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L4b
chrM:15734T>C, chrM:15785T>C
L4b1
chrM:10236C>T, chrM:16142C>T, chrM:16196T>C, chrM:4400T>C, chrM:4883G>A
L4b1a
chrM:1228A>G, chrM:12920A>G, chrM:13439G>A, chrM:14328G>A, chrM:15662C>T, chrM:15743C>T, chrM:16191T>C, chrM:2434G>A, chrM:2928A>G, chrM:3341G>A, chrM:3440C>T, chrM:3452C>A, chrM:3639T>C, chrM:3655T>C, chrM:8397C>G, chrM:8671C>T, chrM:9409G>A
chrM:133G>A [Node1843]
chrM:133G>A, chrM:7047T>C, chrM:8037T>C

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 693168546 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG03458.final.cram	CRAM	—	GRCh38	bwa mem	73de66b6578b2766b8cce654116bc704	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.