SAMN01090778

EXTERNAL

Sample

Accession

SAMN01090778

Alias

HG03380

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual HG03380

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:1785G>A

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L1
chrM:13212T>C, chrM:13601T>C, chrM:13983G>A, chrM:15716A>G, chrM:16181A>G, chrM:3089G>A, chrM:6478A>G, chrM:6812T>C
L1c
chrM:10009G>A, chrM:12908A>G, chrM:13423T>A, chrM:14334C>T, chrM:15552G>A, chrM:15717C>T, chrM:15783C>T, chrM:16143C>T, chrM:16178C>A, chrM:16181G>C, chrM:16309G>A, chrM:5374A>G, chrM:5494T>C, chrM:7450G>A, chrM:8495A>G
L1c1'2'4'6
chrM:16190C>T, chrM:16289A>G, chrM:9744T>C
L1c1
chrM:13571A>G, chrM:3219A>T, chrM:3266A>G
L1c1c
chrM:15717C>T, chrM:5690G>A, chrM:7810G>A, chrM:7812A>G, chrM:8656T>C
chrM:15595T>C
chrM:15595T>C, chrM:15684C>T
chrM:4414G>A
chrM:15509T>C, chrM:15592C>T, chrM:4414G>A, chrM:8920T>C
chrM:1785G>A
chrM:10776T>C, chrM:13710T>C, chrM:15235G>A, chrM:15636G>A, chrM:15662C>T, chrM:15680C>T, chrM:15950C>T, chrM:1785G>A, chrM:5196G>A, chrM:6115A>G, chrM:6985A>G

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 766767492 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG03380.final.cram	CRAM	—	GRCh38	bwa mem	31ba1d76652b6eecfc9f02d4c9e6a6dd	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.