SAMN01090761

EXTERNAL

Sample

Accession

SAMN01090761

Alias

HG02820

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual HG02820

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:8187G>A

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L1
chrM:13212T>C, chrM:13601T>C, chrM:13983G>A, chrM:15716A>G, chrM:16181A>G, chrM:3089G>A, chrM:6478A>G, chrM:6812T>C
L1b
chrM:1162T>C, chrM:133G>A, chrM:134T>C, chrM:14192A>G, chrM:14538T>C, chrM:15549T>C, chrM:15687C>T, chrM:15693C>T, chrM:16177G>T, chrM:16187C>T, chrM:16350A>G, chrM:1776T>C, chrM:2192A>G, chrM:2731T>C, chrM:3116G>A, chrM:5971C>T, chrM:6250T>C, chrM:6412A>G, chrM:7290C>T, chrM:7671A>G, chrM:862G>A
L1b2
chrM:13316A>G, chrM:13746G>A, chrM:15662C>T
L1b2a
chrM:11594A>G, chrM:15534C>T, chrM:15687C>T, chrM:16138T>C
chrM:2762A>G
chrM:2762A>G, chrM:4178T>C
chrM:8187G>A
chrM:12443T>C, chrM:14189T>C, chrM:15644C>T, chrM:15716A>G, chrM:8187G>A

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 724327744 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG02820.final.cram	CRAM	—	GRCh38	bwa mem	adbb08e5439fb93dad8baa00decef5e6	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.