SAMN01036749

EXTERNAL

Sample

Accession

SAMN01036749

Alias

HG03040

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual HG03040

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:2327T>C

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
chrM:12528A>G
chrM:12528A>G, chrM:15547T>C
L3d1'2'3'4'5'6
chrM:13309T>C, chrM:13707C>T, chrM:345T>C, chrM:4570G>A, chrM:6847A>G, chrM:8041T>C
L3d1
chrM:6103T>C
L3d1b
chrM:4469G>A
chrM:16142C>T [Node1879]
chrM:16142C>T
L3d1b1
chrM:5695A>G
chrM:2327T>C
chrM:10069G>A, chrM:15516T>C, chrM:15679C>T, chrM:15717C>T, chrM:16142C>T, chrM:2327T>C, chrM:5689A>G, chrM:9070T>C

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 701364478 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG03040.final.cram	CRAM	—	GRCh38	bwa mem	659b800137086869a0cba61c886a5708	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.