SAMN01036740

EXTERNAL

Sample

Accession

SAMN01036740

Alias

HG02888

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual HG02888

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:5830T>C

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L2
chrM:12194G>A, chrM:13013G>A, chrM:15813G>A, chrM:16138T>C, chrM:16187T>C, chrM:1840T>C, chrM:7629G>A, chrM:8644A>G, chrM:9538T>C
L2a'b'c'd
chrM:11367T>C
L2b'c'd
chrM:16142C>T, chrM:1756C>T
L2b'c
chrM:14533G>A, chrM:14640G>A, chrM:15942C>T, chrM:16190C>T, chrM:7047T>A, chrM:866G>A
L2c
chrM:104T>C, chrM:13351G>C, chrM:13381G>C, chrM:133G>A, chrM:15272C>T, chrM:16318C>T, chrM:2623T>A
chrM:16087A>C
chrM:16087A>C
chrM:14173A>T
chrM:14173A>T
chrM:5830T>C
chrM:5830T>C, chrM:9877T>C

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 704531002 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG02888.final.cram	CRAM	—	GRCh38	bwa mem	0a027a3a10adcace6348483262f4f9ec	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.