SAMN00801105

EXTERNAL

Sample

Accession

SAMN00801105

Alias

NA12046

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual NA12046

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:4118T>C

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
R2'JT
JT
chrM:10674A>G, chrM:14875C>A, chrM:15549T>C, chrM:3639T>C
T
chrM:12791G>A, chrM:1312G>A, chrM:133G>A, chrM:14328G>A, chrM:15030A>G, chrM:15351G>A, chrM:15717C>T, chrM:4340A>G, chrM:8120G>A, chrM:9886T>C
T2
chrM:11235A>G, chrM:13656A>G
T2b
chrM:15727T>C, chrM:354G>A, chrM:4570G>A
T2b1
chrM:13439G>A
chrM:4118T>C
chrM:4118T>C, chrM:5455G>A

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 737639300 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
NA12046.final.cram	CRAM	—	GRCh38	bwa mem	8c698eeca26e0aaf37a732cc391a6266	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.