SAMN00800975

EXTERNAL

Sample

Accession

SAMN00800975

Alias

NA11933

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual NA11933

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway W5a1

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
W
chrM:11097C>T, chrM:11837T>C, chrM:133G>A, chrM:15307G>C, chrM:15715C>T, chrM:16181A>G, chrM:16196T>C, chrM:16199G>A, chrM:2928A>G, chrM:4469G>A, chrM:4883G>A, chrM:667T>C, chrM:7674G>A, chrM:8417G>A
W-C194T
chrM:16186C>T
W5a
chrM:15198A>G, chrM:15785T>C, chrM:5951C>T, chrM:9520A>G
W5a1
chrM:9833T>C

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 742996038 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
NA11933.final.cram	CRAM	—	GRCh38	bwa mem	01e5bd4e57d4a00d400478cdbf2d006a	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.