SAMN00630211

EXTERNAL

Sample

Accession

SAMN00630211

Alias

HG02143

Sex

Male

Center

NYGC

Description

Human 1000 genomes individual HG02143

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway L3k1

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
L3e'i'k'x
chrM:10242A>G
L3k
chrM:12558G>A, chrM:13415C>T, chrM:14737G>A, chrM:16487C>T, chrM:3341G>A, chrM:6043T>G, chrM:8072A>G, chrM:8890T>C
L3k1
chrM:12965A>G, chrM:13285A>G, chrM:14877T>C, chrM:15778C>T, chrM:15942C>T, chrM:159A>G, chrM:16227A>G, chrM:3736T>C, chrM:8430A>T, chrM:8752G>A, chrM:9731C>T

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 962212492 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG02143.final.cram	CRAM	—	GRCh38	bwa mem	4bbc93973b943b3a686615656c927205	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.