SAMN00262987

EXTERNAL

Sample

Accession

SAMN00262987

Alias

HG02282

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual HG02282

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway L1c2a1b

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L1
chrM:13212T>C, chrM:13601T>C, chrM:13983G>A, chrM:15716A>G, chrM:16181A>G, chrM:3089G>A, chrM:6478A>G, chrM:6812T>C
L1c
chrM:10009G>A, chrM:12908A>G, chrM:13423T>A, chrM:14334C>T, chrM:15552G>A, chrM:15717C>T, chrM:15783C>T, chrM:16143C>T, chrM:16178C>A, chrM:16181G>C, chrM:16309G>A, chrM:5374A>G, chrM:5494T>C, chrM:7450G>A, chrM:8495A>G
L1c1'2'4'6
chrM:16190C>T, chrM:16289A>G, chrM:9744T>C
L1c2'4
chrM:11472C>T, chrM:15716A>G
L1c2
chrM:10215A>G, chrM:10216C>T, chrM:11077A>G, chrM:12572A>G, chrM:15688A>C, chrM:15709C>G, chrM:15950C>T, chrM:5573G>A, chrM:5676T>C, chrM:6499A>G, chrM:6760G>A, chrM:8207A>G, chrM:8300T>C
L1c2a
chrM:14439C>T, chrM:15207T>C, chrM:844T>C
L1c2a1
chrM:15636G>A
chrM:15568G>A
chrM:15568G>A
L1c2a1b
chrM:11505A>G, chrM:15509T>C, chrM:3200T>C, chrM:4165T>C, chrM:4243G>A, chrM:4660G>A, chrM:5078T>C

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 763271618 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG02282.final.cram	CRAM	—	GRCh38	bwa mem	c64408c1a47b00af6141c860d89175e5	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.