SAMN00262978

EXTERNAL

Sample

Accession

SAMN00262978

Alias

HG02054

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual HG02054

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway U6a3c

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
U
chrM:10890A>G, chrM:11731A>G, chrM:11795G>A
U6a'b'd
chrM:15595T>C, chrM:15642A>G, chrM:2771A>G
U6a
chrM:13602A>G, chrM:15701C>T, chrM:7228G>A
U6a3f
chrM:15213C>T, chrM:16142C>T
chrM:16177G>A [Node139]
chrM:16177G>A
U6a3c
chrM:10695A>G, chrM:1143G>A, chrM:1233T>C, chrM:14803A>G, chrM:15766A>G, chrM:15942C>T, chrM:16138T>C, chrM:16142C>T, chrM:16181A>G, chrM:4977C>A, chrM:5605G>A, chrM:6316C>T

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 673519444 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG02054.final.cram	CRAM	—	GRCh38	bwa mem	c2adf3f02095f32c424a824a10584b5d	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.