SAMN00262977

EXTERNAL

Sample

Accession

SAMN00262977

Alias

HG02053

Sex

Male

Center

NYGC

Description

Human 1000 genomes individual HG02053

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:9371G>A

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L1
chrM:13212T>C, chrM:13601T>C, chrM:13983G>A, chrM:15716A>G, chrM:16181A>G, chrM:3089G>A, chrM:6478A>G, chrM:6812T>C
L1c
chrM:10009G>A, chrM:12908A>G, chrM:13423T>A, chrM:14334C>T, chrM:15552G>A, chrM:15717C>T, chrM:15783C>T, chrM:16143C>T, chrM:16178C>A, chrM:16181G>C, chrM:16309G>A, chrM:5374A>G, chrM:5494T>C, chrM:7450G>A, chrM:8495A>G
L1c1'2'4'6
chrM:16190C>T, chrM:16289A>G, chrM:9744T>C
L1c1
chrM:13571A>G, chrM:3219A>T, chrM:3266A>G
L1c1a'b'd
chrM:11322T>C
L1c1a-T198C!
chrM:13511T>C, chrM:16190C>T, chrM:3877T>A, chrM:7510T>C
L1c1a2
chrM:15697G>A, chrM:16081T>C, chrM:16085A>G, chrM:16087A>C, chrM:16143C>T, chrM:16228T>C, chrM:2179A>G, chrM:2287T>C, chrM:2936C>T, chrM:3350A>G, chrM:9070T>C
chrM:9371G>A
chrM:12632C>T, chrM:12692A>G, chrM:15222A>G, chrM:15610T>C, chrM:16187C>T, chrM:9371G>A

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 696812036 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG02053.final.cram	CRAM	—	GRCh38	bwa mem	8d41dc8b941106dea9d44056f6e28952	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.