SAMN00262972

EXTERNAL

Sample

Accession

SAMN00262972

Alias

HG01958

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual HG01958

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:10635C>T

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L2
chrM:12194G>A, chrM:13013G>A, chrM:15813G>A, chrM:16138T>C, chrM:16187T>C, chrM:1840T>C, chrM:7629G>A, chrM:8644A>G, chrM:9538T>C
L2a'b'c'd
chrM:11367T>C
L2a
chrM:6598T>C
L2a1'2'3'4
chrM:11337G>A, chrM:13226A>G, chrM:13989A>G, chrM:15717C>T, chrM:6697C>T, chrM:7194A>G
L2a1
chrM:15207T>C, chrM:16174T>C
L2a1e1
chrM:14022A>G, chrM:2918C>A, chrM:7964G>A, chrM:8213G>A
chrM:10635C>T
chrM:10635C>T, chrM:15549T>C, chrM:15717C>T, chrM:16135G>A, chrM:16138T>C

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 759652932 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG01958.final.cram	CRAM	—	GRCh38	bwa mem	ff856be07dd2a0a7401d3a13465cb5cd	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.