SAMN00249942

EXTERNAL

Sample

Accession

SAMN00249942

Alias

HG02187

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual HG02187

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:660C>T

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
M
chrM:14206T>C, chrM:14466G>A, chrM:16482T>C, chrM:9823C>T
M7b'c
chrM:3494C>T, chrM:5878C>T, chrM:9247T>C
M7c
chrM:11088C>T, chrM:11514T>C, chrM:16138T>C, chrM:4273C>T
M7c1
chrM:15718C>T, chrM:4865T>C
M7c1a
chrM:3305G>A
chrM:660C>T
chrM:1233T>C, chrM:15498T>C, chrM:15716A>T, chrM:2739G>A, chrM:660C>T

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 717107956 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG02187.final.cram	CRAM	—	GRCh38	bwa mem	8566e5ee2c783d1c987fb6dc758aa3ee	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.