SAMN00249907

EXTERNAL

Sample

Accession

SAMN00249907

Alias

HG01798

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual HG01798

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway B4b1a2

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
B4
chrM:15640T>C
B4b'd'e'j
chrM:14958C>T, chrM:251A>G
B4b
chrM:13013G>A, chrM:16492G>A, chrM:4243G>A
B4b1
chrM:15559T>C
B4b1a
chrM:5446G>A, chrM:5836T>C
B4b1a-G207A
B4b1a2
chrM:5639T>C

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 1022342836 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG01798.final.cram	CRAM	—	GRCh38	bwa mem	fe6f6c3fa6ba7acabcc4de75d75c9a2e	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.