SAMN00249906

EXTERNAL

Sample

Accession

SAMN00249906

Alias

HG01797

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual HG01797

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway F3a1

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
R9
chrM:13351G>C, chrM:3393C>T
F
chrM:5815T>C, chrM:9733G>A
chrM:15942C>T [Node2663]
chrM:15942C>T
F3
chrM:10488A>G, chrM:15721T>C, chrM:15727T>C, chrM:15785T>C, chrM:2857A>G, chrM:5008G>A, chrM:5336G>A, chrM:5401A>G, chrM:9743G>A
F3a1
chrM:12044C>T, chrM:133G>A, chrM:14394T>C, chrM:14835T>G, chrM:15683C>T, chrM:15778C>T, chrM:16199G>A, chrM:4247A>G, chrM:4414G>A

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 750309614 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG01797.final.cram	CRAM	—	GRCh38	bwa mem	bde730d1277a38782d9a3291c80fc8b7	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.