SAMN00009220

EXTERNAL

Sample

Accession

SAMN00009220

Alias

HG01272

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual HG01272

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway M1a1i

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
M
chrM:14206T>C, chrM:14466G>A, chrM:16482T>C, chrM:9823C>T
M1a1
chrM:11769C>T, chrM:11826C>T, chrM:13533T>C, chrM:15672T>C, chrM:15782T>C, chrM:16187T>C, chrM:237A>G, chrM:3128G>A, chrM:5869G>A, chrM:6094T>C, chrM:6103T>C
M1a1i
chrM:14948A>G, chrM:15950C>T, chrM:16196T>C, chrM:16255G>A, chrM:2933C>T, chrM:9268T>C

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 743800766 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG01272.final.cram	CRAM	—	GRCh38	bwa mem	738ec5669712eb7e88fa58f9a3e9b7e7	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.