SAMN00009171

EXTERNAL

Sample

Accession

SAMN00009171

Alias

HG01170

Sex

Male

Center

NYGC

Description

Human 1000 genomes individual HG01170

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway L3e1e2

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
L3e'i'k'x
chrM:10242A>G
L3e
chrM:13635T>C, chrM:1776T>C
L3e1
chrM:13575A>G, chrM:15093T>C, chrM:15365T>C, chrM:15750C>T, chrM:15942C>T, chrM:16181A>G, chrM:5644T>C, chrM:6010C>T
chrM:16192A>G
chrM:16192A>G
L3e1e
chrM:9793T>C
L3e1e2
chrM:16065A>G, chrM:16082G>A, chrM:16089G>A, chrM:3985A>G, chrM:8521T>C

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 671789868 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG01170.final.cram	CRAM	—	GRCh38	bwa mem	0fa56b4bfc0700e95bcfaa48cab93947	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.