SAMN00009112

EXTERNAL
Sample
Accession
SAMN00009112
Alias
HG00341
Sex
Male
Center
NYGC
Description
Human 1000 genomes individual HG00341
Source publications
Y-DNA pathway
No haplogroup call for this sample.
mtDNA pathway U5b1b2a
From de-novo tree placement
  1. mt-MRCA
  2. L1'2'3'4'5'6'7
    chrM:16181G>A
  3. L2'3'4'5'6'7
    chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
  4. L2'3'4'6
    chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
  5. L3'4
    chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
  6. L3
    chrM:193A>G, chrM:442A>G
  7. N
    chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
  8. R
    chrM:15646T>C
  9. U
    chrM:10890A>G, chrM:11731A>G, chrM:11795G>A
  10. U5
    chrM:13040T>C, chrM:15693C>T
  11. U5a'b
    chrM:2620T>C, chrM:8900G>A
  12. U5b
    chrM:13605T>C, chrM:16142C>T, chrM:7191A>G
  13. U5b1-T16189C!
    chrM:5079A>G
  14. U5b1b
    chrM:12041G>A
  15. U5b1b2
    chrM:16209T>C
  16. U5b1b2a
    chrM:2857A>G
Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files
Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 726229256 · Read length: 150 · Date: 2020-05-14
File Format Size Reference Aligner md5
HG00341.final.cram CRAM — GRCh38 bwa mem 6853b12e976ebb550fe095871d2cb826 Download
Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.

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