SAMN00007972

EXTERNAL

Sample

Accession

SAMN00007972

Alias

NA21130

Sex

Male

Center

NYGC

Description

Human 1000 genomes individual NA21130

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:12773A>G

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
U
chrM:10890A>G, chrM:11731A>G, chrM:11795G>A
U2'3'4'7'8'9
chrM:1235A>G
U7
chrM:12923T>C, chrM:13992G>A, chrM:15732A>G, chrM:15741A>T, chrM:3164C>T, chrM:404T>C, chrM:4783C>T, chrM:7560C>T, chrM:8107C>T, chrM:9565C>T
U7a
chrM:16143C>T
U7a3
chrM:12041G>A
U7a3a
chrM:15732A>G, chrM:9275A>G
chrM:248T>C
chrM:15492C>T, chrM:15697G>A, chrM:2287T>C, chrM:248T>C, chrM:6043T>C
chrM:12773A>G
chrM:12773A>G, chrM:13641T>C

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 733606940 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
NA21130.final.cram	CRAM	—	GRCh38	bwa mem	107d5e48017a5d548a04a83f5e066bfc	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.