SAMN00007910

EXTERNAL

Sample

Accession

SAMN00007910

Alias

NA20885

Sex

Male

Center

NYGC

Description

Human 1000 genomes individual NA20885

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway M2c

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
M
chrM:14206T>C, chrM:14466G>A, chrM:16482T>C, chrM:9823C>T
M2
chrM:10506A>G, chrM:1204T>C, chrM:15093T>C, chrM:15697G>A, chrM:16440C>G
M2c
chrM:1022G>A, chrM:11304C>T, chrM:12635C>T, chrM:1312G>A, chrM:14223C>T, chrM:15352A>G, chrM:15650A>G, chrM:15942C>T, chrM:16138T>C, chrM:16363C>A, chrM:2861G>A, chrM:3152A>C, chrM:3639T>C, chrM:9121T>C, chrM:9580A>G

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 682086406 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
NA20885.final.cram	CRAM	—	GRCh38	bwa mem	19323e4e1186adf8b7a0f2496178e8fe	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.