SAMN00007892

EXTERNAL

Sample

Accession

SAMN00007892

Alias

NA20861

Sex

Male

Center

NYGC

Description

Human 1000 genomes individual NA20861

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:16199G>A [Node2722]

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
chrM:955C>T
chrM:12980A>G, chrM:13976C>T, chrM:15595T>C, chrM:16138T>C, chrM:7404C>T, chrM:955C>T
R31a
chrM:10054C>T, chrM:1031T>C, chrM:1100A>G, chrM:11849C>A, chrM:13191T>A, chrM:14757C>T, chrM:15307G>A, chrM:16331C>T, chrM:4771C>T, chrM:5716T>C, chrM:5903G>A, chrM:6625A>G, chrM:9796G>A
chrM:16199G>A [Node2722]
chrM:16199G>A

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 716474810 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
NA20861.final.cram	CRAM	—	GRCh38	bwa mem	2aa40fcbca74918d3366ddee8de6599f	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.