SAMN00007818

EXTERNAL

Sample

Accession

SAMN00007818

Alias

NA19917

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual NA19917

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway L1c1b

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L1
chrM:13212T>C, chrM:13601T>C, chrM:13983G>A, chrM:15716A>G, chrM:16181A>G, chrM:3089G>A, chrM:6478A>G, chrM:6812T>C
L1c
chrM:10009G>A, chrM:12908A>G, chrM:13423T>A, chrM:14334C>T, chrM:15552G>A, chrM:15717C>T, chrM:15783C>T, chrM:16143C>T, chrM:16178C>A, chrM:16181G>C, chrM:16309G>A, chrM:5374A>G, chrM:5494T>C, chrM:7450G>A, chrM:8495A>G
L1c1'2'4'6
chrM:16190C>T, chrM:16289A>G, chrM:9744T>C
L1c1
chrM:13571A>G, chrM:3219A>T, chrM:3266A>G
L1c1a'b'd
chrM:11322T>C
L1c1b'd
L1c1b
chrM:13297T>C, chrM:13816A>G, chrM:15509T>C, chrM:15664A>G, chrM:16409T>A, chrM:16513C>T, chrM:16514A>T, chrM:3257G>A, chrM:4012T>C, chrM:4111T>C, chrM:4903A>G, chrM:4976T>C, chrM:6619C>T, chrM:7083T>C, chrM:715T>C, chrM:7578G>A, chrM:8042C>T, chrM:9284T>C, chrM:9507T>C

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 735831390 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
NA19917.final.cram	CRAM	—	GRCh38	bwa mem	9d3856157206e832573b33b7cf922fd3	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.