SAMN00007764

EXTERNAL

Sample

Accession

SAMN00007764

Alias

NA19746

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual NA19746

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:5051T>C [Node2171]

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
A
chrM:15713C>T, chrM:15742G>A, chrM:16227A>G, chrM:3671T>C, chrM:4247A>G, chrM:8217C>T, chrM:87A>G
A-T152C!
chrM:15785T>C
A2-x
chrM:11430G>A, chrM:16145A>G, chrM:7450G>A
A2m
chrM:14595G>A, chrM:15663A>G, chrM:8370C>T, chrM:8462G>A
chrM:5051T>C [Node2171]
chrM:10416G>A, chrM:14850A>G, chrM:16187T>C, chrM:16196T>C, chrM:5051T>C, chrM:6571T>C

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 772795112 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
NA19746.final.cram	CRAM	—	GRCh38	bwa mem	ad1d0a9eadfb8fcbf6cc0f0bc6039143	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.