SAMN00006599

EXTERNAL

Sample

Accession

SAMN00006599

Alias

HG01080

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual HG01080

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway L1c3b1a

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L1
chrM:13212T>C, chrM:13601T>C, chrM:13983G>A, chrM:15716A>G, chrM:16181A>G, chrM:3089G>A, chrM:6478A>G, chrM:6812T>C
L1c
chrM:10009G>A, chrM:12908A>G, chrM:13423T>A, chrM:14334C>T, chrM:15552G>A, chrM:15717C>T, chrM:15783C>T, chrM:16143C>T, chrM:16178C>A, chrM:16181G>C, chrM:16309G>A, chrM:5374A>G, chrM:5494T>C, chrM:7450G>A, chrM:8495A>G
L1c3
chrM:10725C>T, chrM:14649A>G, chrM:15328T>C, chrM:15401C>T, chrM:16187C>T, chrM:5644T>A, chrM:6340G>A, chrM:6478A>G
L1c3b
chrM:13404C>T, chrM:14217C>T, chrM:15586A>G, chrM:7674G>A
L1c3b1
chrM:11823A>G, chrM:15440T>C, chrM:1707C>T, chrM:2633C>T, chrM:2857A>G, chrM:4178T>C, chrM:53T>C, chrM:7840C>T
L1c3b1a
chrM:10740A>G, chrM:13131G>A, chrM:15632T>C

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 773247122 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG01080.final.cram	CRAM	—	GRCh38	bwa mem	459ef941c97a4d5b7250c96ef895e4ab	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.