SAMN00006556

EXTERNAL

Sample

Accession

SAMN00006556

Alias

HG00684

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual HG00684

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:10773A>G

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
M
chrM:14206T>C, chrM:14466G>A, chrM:16482T>C, chrM:9823C>T
D
chrM:15785T>C, chrM:4306C>T, chrM:4601C>A
D5
chrM:4724A>G, chrM:531T>C, chrM:9820A>G
D5a'b
chrM:16142C>T, chrM:8603A>G
D5a2
chrM:11367T>C, chrM:11449A>G, chrM:176C>T, chrM:862G>A
D5a2a-T16092C
chrM:15515T>C, chrM:15689C>T
D5a2a1-C16172T!
D5a2a1b
chrM:2951C>T
chrM:10773A>G
chrM:10773A>G, chrM:13191T>C, chrM:13463G>A, chrM:14738C>T

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 679983178 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG00684.final.cram	CRAM	—	GRCh38	bwa mem	82928ce0a0da7a8e075d32f5608384c9	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.