SAMN00006543

EXTERNAL

Sample

Accession

SAMN00006543

Alias

HG00653

Sex

Male

Center

NYGC

Description

Human 1000 genomes individual HG00653

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway N8

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
N8
chrM:13133A>G, chrM:14634C>T, chrM:14868T>C, chrM:15697G>A, chrM:15734T>C, chrM:15766A>G, chrM:15780T>C, chrM:2184A>G, chrM:2451T>C, chrM:7308T>C, chrM:7384T>C, chrM:7611A>G

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 1134388122 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG00653.final.cram	CRAM	—	GRCh38	bwa mem	ee20d05413445b70b6b54210bebe4428	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.