SAMN00006487

EXTERNAL

Sample

Accession

SAMN00006487

Alias

HG00557

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual HG00557

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway A5b1b

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
A
chrM:15713C>T, chrM:15742G>A, chrM:16227A>G, chrM:3671T>C, chrM:4247A>G, chrM:8217C>T, chrM:87A>G
A5
chrM:10959C>T, chrM:7986A>G
A5b1
chrM:1133G>A, chrM:15549T>C, chrM:15658A>G, chrM:385T>C
A5b1b
chrM:1160G>A, chrM:14778G>A, chrM:15657C>T, chrM:5789G>A, chrM:7674G>A

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 742655738 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG00557.final.cram	CRAM	—	GRCh38	bwa mem	a81b3a78a8c9ea8752944836b9e9a933	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.