SAMN00006460

EXTERNAL

Sample

Accession

SAMN00006460

Alias

HG00479

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual HG00479

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:133G>A [Node2297]

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
N9
chrM:4840G>A
N9a
chrM:11781A>G, chrM:11795G>A, chrM:15680C>A, chrM:16142C>T, chrM:4654G>A
N9a1'3
chrM:15552G>A
N9a1
chrM:15534C>T, chrM:3809T>C
chrM:11430G>A
chrM:11430G>A
chrM:133G>A [Node2297]
chrM:13001C>T, chrM:133G>A, chrM:15516T>C

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 671526646 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG00479.final.cram	CRAM	—	GRCh38	bwa mem	62db7aac2f84d79bd9f2c9f6cb221b8d	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.