SAMN00006445

EXTERNAL

Sample

Accession

SAMN00006445

Alias

HG00428

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual HG00428

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway C4a1a2a

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
M
chrM:14206T>C, chrM:14466G>A, chrM:16482T>C, chrM:9823C>T
CZ
chrM:14910A>T, chrM:15721T>C, chrM:4138A>G, chrM:6619C>A, chrM:8007G>A
C1
chrM:11337G>A, chrM:12686A>G, chrM:13741T>C, chrM:15748T>C, chrM:2975T>A, chrM:8968A>G
C4
chrM:11392G>A, chrM:14627T>C, chrM:5449G>A
C4a
C4a1a2
chrM:10314A>G, chrM:1139C>T, chrM:15391T>C, chrM:15516T>C, chrM:15552G>A, chrM:16187T>C, chrM:7422T>C
C4a1a2a
chrM:10108G>A, chrM:14934T>C, chrM:3671T>C, chrM:6725T>C

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 726527808 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG00428.final.cram	CRAM	—	GRCh38	bwa mem	338dcdb9c6a3cefd0c5bd5460a1aca52	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.