SAMN00006433

EXTERNAL

Sample

Accession

SAMN00006433

Alias

HG00404

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual HG00404

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway B5b2c1

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
B5
chrM:15563T>C, chrM:8007G>A, chrM:9373T>C
B5b
chrM:1022G>A, chrM:11784A>G, chrM:14646C>T, chrM:14931C>T, chrM:15085A>G, chrM:15274A>G, chrM:15350G>A, chrM:15666T>C, chrM:16095G>A, chrM:16196T>C, chrM:8252C>T
B5b2
chrM:15273T>C, chrM:15534C>T, chrM:15657C>T, chrM:15886A>G, chrM:4318A>G
B5b2c1
chrM:10524A>G, chrM:11874A>G, chrM:14442T>C, chrM:15474A>G, chrM:15552G>A, chrM:15568G>A, chrM:16196C>T, chrM:16474C>T, chrM:1785G>A, chrM:3584C>T, chrM:8861G>A, chrM:9443T>C, chrM:9850G>A

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 688651840 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG00404.final.cram	CRAM	—	GRCh38	bwa mem	a89652586e64fc4dddad9f487d04d038	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.