SAMN00006340

EXTERNAL

Sample

Accession

SAMN00006340

Alias

HG00122

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual HG00122

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway U5b2c2b

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
U
chrM:10890A>G, chrM:11731A>G, chrM:11795G>A
U5
chrM:13040T>C, chrM:15693C>T
U5a'b
chrM:2620T>C, chrM:8900G>A
U5b
chrM:13605T>C, chrM:16142C>T, chrM:7191A>G
U5b2
chrM:1145C>T, chrM:13060A>G
U5b2c2b
chrM:12440A>G, chrM:147A>G, chrM:15672T>C, chrM:3284A>G, chrM:5259A>G, chrM:9685A>G

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 784773398 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG00122.final.cram	CRAM	—	GRCh38	bwa mem	07781d5a9ff2dfd121656a6da3265e0a	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.