SAMN00004684

EXTERNAL

Sample

Accession

SAMN00004684

Alias

HG00443

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual HG00443

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:3137A>G

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
M
chrM:14206T>C, chrM:14466G>A, chrM:16482T>C, chrM:9823C>T
CZ
chrM:14910A>T, chrM:15721T>C, chrM:4138A>G, chrM:6619C>A, chrM:8007G>A
M8a2'3
chrM:13893T>C, chrM:15607C>T, chrM:15742G>A, chrM:5602G>A, chrM:8107C>T
M8a2
chrM:2259C>T
M8a2a1
chrM:10599G>A, chrM:15893G>A, chrM:15894G>A, chrM:15896G>A
chrM:3137A>G
chrM:11055C>T, chrM:14934T>C, chrM:15734T>C, chrM:15813G>A, chrM:15891T>C, chrM:3137A>G, chrM:5639T>C

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 812240132 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
HG00443.final.cram	CRAM	—	GRCh38	bwa mem	74f61c93f9cc741256a2f3453a3eb353	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.