SAMN00004484

EXTERNAL

Sample

Accession

SAMN00004484

Alias

NA20339

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual NA20339

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway L3d1c1

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
chrM:12528A>G
chrM:12528A>G, chrM:15547T>C
L3d1'2'3'4'5'6
chrM:13309T>C, chrM:13707C>T, chrM:345T>C, chrM:4570G>A, chrM:6847A>G, chrM:8041T>C
L3d1
chrM:6103T>C
chrM:8534T>C
chrM:10662A>G, chrM:8534T>C
L3d1c
chrM:12965A>G, chrM:2626A>G
L3d1c1
chrM:4795A>G, chrM:8677A>G

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 759864348 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
NA20339.final.cram	CRAM	—	GRCh38	bwa mem	381874028397bc5786d2fff3b1bdeafa	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.