SAMN00001688

EXTERNAL

Sample

Accession

SAMN00001688

Alias

NA19204

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual NA19204

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:4505T>C

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
L3e'i'k'x
chrM:10242A>G
L3e
chrM:13635T>C, chrM:1776T>C
L3e2
chrM:14328G>A, chrM:15743C>T, chrM:16187T>C
L3e2a
chrM:12528A>G, chrM:14292G>A, chrM:4246T>C
chrM:5467T>C
chrM:16181A>G, chrM:5467T>C
chrM:4505T>C
chrM:4505T>C

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 772703828 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
NA19204.final.cram	CRAM	—	GRCh38	bwa mem	f3a217aec803608f77a285ff2082b1e3	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.