SAMN00001684

EXTERNAL

Sample

Accession

SAMN00001684

Alias

NA19172

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual NA19172

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:1245A>G

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
L3f1b-C16292T-C150T
chrM:10863G>A, chrM:1246T>C, chrM:14192A>G, chrM:14937T>C, chrM:15632T>C, chrM:15715C>T, chrM:15734T>C, chrM:16181A>G, chrM:16192A>G, chrM:2819T>C, chrM:3641T>C, chrM:5024C>T, chrM:7242C>A, chrM:7950A>G, chrM:8355C>T, chrM:9373T>C
chrM:10093C>T
chrM:10093C>T, chrM:15697G>A, chrM:16199G>A
chrM:1245A>G
chrM:1245A>G, chrM:13629A>G, chrM:15658A>G, chrM:6505C>T, chrM:7590T>C

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 717739074 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
NA19172.final.cram	CRAM	—	GRCh38	bwa mem	cb0af90465ac9977682727ab43b2d21e	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.