SAMN00001597

EXTERNAL

Sample

Accession

SAMN00001597

Alias

NA18545

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual NA18545

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:12056C>T

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
R9
chrM:13351G>C, chrM:3393C>T
F
chrM:5815T>C, chrM:9733G>A
F1
chrM:10032T>C, chrM:11829G>A, chrM:6385G>A
F1-T16189C!
F1b1
chrM:10399C>T, chrM:13899G>A, chrM:15655C>A, chrM:4155A>G, chrM:4570G>A
chrM:12056C>T
chrM:12056C>T, chrM:15672T>C, chrM:15734T>C

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 789526334 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
NA18545.final.cram	CRAM	—	GRCh38	bwa mem	8da607b95715fd80ebda0631071d8fe8	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.