SAMN00001258

EXTERNAL

Sample

Accession

SAMN00001258

Alias

NA20539

Sex

Male

Center

NYGC

Description

Human 1000 genomes individual NA20539

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway K1a1b1

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
U
chrM:10890A>G, chrM:11731A>G, chrM:11795G>A
U2'3'4'7'8'9
chrM:1235A>G
U8
chrM:9121T>C
U8b
chrM:13590C>T, chrM:2903A>G, chrM:8478G>A
K
chrM:10722T>C, chrM:14221T>C, chrM:15647T>C, chrM:15734T>C, chrM:9973A>G
K1
chrM:613T>C, chrM:9821A>G
K1a
chrM:16490C>T
K1a1b
chrM:11337G>A, chrM:15347A>G
K1a1b1
chrM:10893A>G

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 688900246 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
NA20539.final.cram	CRAM	—	GRCh38	bwa mem	12bee5636903ee4b8c536abaf217a1b8	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.