SAMN00001162

EXTERNAL

Sample

Accession

SAMN00001162

Alias

NA19434

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual NA19434

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:3444A>G

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L4b
chrM:15734T>C, chrM:15785T>C
L4b2
chrM:12893A>G, chrM:15716A>T, chrM:15778C>T, chrM:15822A>G, chrM:16138T>C, chrM:16236A>G, chrM:3341G>A, chrM:5683G>A, chrM:7527T>C, chrM:9278A>G
L4b2a2
chrM:10206A>C, chrM:1118T>C, chrM:4372A>G, chrM:837T>C
chrM:15595T>C [Node1852]
chrM:15595T>C
L4b2a2c
chrM:14877T>C, chrM:16384T>C, chrM:7901C>T
chrM:3444A>G
chrM:3444A>G, chrM:6878A>G, chrM:7494A>C, chrM:7542T>C, chrM:7671A>G, chrM:9955A>G

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 814426760 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
NA19434.final.cram	CRAM	—	GRCh38	bwa mem	7143d3aa8ecc9ee352d0deea6a235135	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.