SAMN00001136

EXTERNAL

Sample

Accession

SAMN00001136

Alias

NA19379

Sex

Female

Center

NYGC

Description

Human 1000 genomes individual NA19379

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:477A>T

From de-novo tree placement

mt-MRCA
L0
chrM:10012G>A, chrM:10087C>T, chrM:10338T>C, chrM:11337G>A, chrM:11430G>A, chrM:12699A>G, chrM:15653A>G, chrM:16174T>C, chrM:2939C>A, chrM:3735C>T, chrM:472C>T, chrM:4865T>C, chrM:5608T>C, chrM:8465C>T, chrM:8770A>G, chrM:9178G>A
L0a'b'f'g
chrM:11064A>G, chrM:14559C>T, chrM:14854G>A, chrM:15595T>C, chrM:15942C>T, chrM:16065A>G, chrM:16085A>G, chrM:16187C>T, chrM:1669A>G, chrM:4009T>C, chrM:5026C>T, chrM:9241C>T
L0a'b'g
chrM:15571C>T, chrM:15610T>C, chrM:16228T>C, chrM:7851C>T, chrM:7989A>G
L0a
chrM:10599G>A, chrM:13731T>C, chrM:15701T>C, chrM:15743C>T, chrM:4654G>A, chrM:4883G>A
L0a1
chrM:15591C>T, chrM:16177G>A, chrM:4519T>C
L0a1a-A200G
chrM:15552G>A, chrM:3289T>C
L0a1a2
chrM:16192A>G
chrM:7725A>G
chrM:7725A>G
chrM:477A>T
chrM:477A>T, chrM:8319G>A

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 771464858 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
NA19379.final.cram	CRAM	—	GRCh38	bwa mem	efca0e1333487c4ce42eae24529d8b22	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.