SAMN00001036

EXTERNAL

Sample

Accession

SAMN00001036

Alias

NA18989

Sex

Male

Center

NYGC

Description

Human 1000 genomes individual NA18989

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway B5b1a2

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
B5
chrM:15563T>C, chrM:8007G>A, chrM:9373T>C
B5b
chrM:1022G>A, chrM:11784A>G, chrM:14646C>T, chrM:14931C>T, chrM:15085A>G, chrM:15274A>G, chrM:15350G>A, chrM:15666T>C, chrM:16095G>A, chrM:16196T>C, chrM:8252C>T
B5b1
chrM:8207A>G
B5b1a2
chrM:10569C>T, chrM:11337G>A, chrM:11615G>A, chrM:13893T>C, chrM:15646C>T, chrM:15741A>T, chrM:15742G>A, chrM:16191T>C

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 956618128 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
NA18989.final.cram	CRAM	—	GRCh38	bwa mem	ad9885111f86a9babdbe12e7f4c98012	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.