SAMN00000475

EXTERNAL

Sample

Accession

SAMN00000475

Alias

NA18868

Sex

Male

Center

NYGC

Description

Human 1000 genomes individual NA18868

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway L2a1c1a

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L2
chrM:12194G>A, chrM:13013G>A, chrM:15813G>A, chrM:16138T>C, chrM:16187T>C, chrM:1840T>C, chrM:7629G>A, chrM:8644A>G, chrM:9538T>C
L2a'b'c'd
chrM:11367T>C
L2a
chrM:6598T>C
L2a1'2'3'4
chrM:11337G>A, chrM:13226A>G, chrM:13989A>G, chrM:15717C>T, chrM:6697C>T, chrM:7194A>G
L2a1
chrM:15207T>C, chrM:16174T>C
L2a1-G143A
chrM:16135G>A
L2a1c
chrM:2434G>A, chrM:6086A>G
L2a1c1
chrM:15509T>C, chrM:2731T>C, chrM:354G>A, chrM:8027T>C
L2a1c1a
chrM:5734C>T

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 735663004 · Read length: 150 · Date: 2020-05-14

File	Format	Size	Reference	Aligner	md5
NA18868.final.cram	CRAM	—	GRCh38	bwa mem	4596b02297df79f1411a6817efdd215c	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.