SAMEA7700443

EXTERNAL

Sample

Accession

SAMEA7700443

Alias

Sex

Female

Center

THE UNIVERSITY OF CHICAGO

Description

aMMD_Samdzong

Source publications

Ancient genomes from the Himalayas illuminate the genetic history of Tibetans and their Tibeto-Burman speaking neighbors (2022)

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway F1g

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
R9
chrM:13351G>C, chrM:3393C>T
F
chrM:5815T>C, chrM:9733G>A
F1
chrM:10032T>C, chrM:11829G>A, chrM:6385G>A
F1g
chrM:1813C>T, chrM:2821T>C

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: NextSeq 500 · Layout: SINGLE · Reads: 28475932 · Read length: — · Date: 2022-01-05

File	Format	Size	Reference	Aligner	md5
ERR6196179.fastq.gz	FASTQ	1008.2 MB	—	—	7087174879e5a29d3a53106dca022bd2	Download

Instrument: Illumina HiSeq 4000 · Layout: SINGLE · Reads: 1833027 · Read length: — · Date: 2022-01-05

File	Format	Size	Reference	Aligner	md5
ERR6196181.fastq.gz	FASTQ	71.9 MB	—	—	6a0726b94404893c142051ed643a58f0	Download

Instrument: Illumina HiSeq 4000 · Layout: PAIRED · Reads: 96653228 · Read length: — · Date: 2022-01-05

File	Format	Size	Reference	Aligner	md5
ERR6196182_1.fastq.gz	FASTQ	2.3 GB	—	—	37790cc93e8c3ddd14a9cf18b165accf	Download
ERR6196182_2.fastq.gz	FASTQ	2.3 GB	—	—	bd738ebb2129ee8bc475a6ea0f4d8bb1	Download

Instrument: NextSeq 500 · Layout: SINGLE · Reads: 28475932 · Read length: — · Date: 2022-01-05

File	Format	Size	Reference	Aligner	md5
ERR6196184.fastq.gz	FASTQ	1008.2 MB	—	—	d45c50b1de15e47c8e74dbddb7d08a47	Download

Instrument: NextSeq 500 · Layout: PAIRED · Reads: 7706336 · Read length: — · Date: 2022-01-05

File	Format	Size	Reference	Aligner	md5
ERR6196171_1.fastq.gz	FASTQ	168.9 MB	—	—	6f4b2730d5740d5980600ee26c7534bb	Download
ERR6196171_2.fastq.gz	FASTQ	175.9 MB	—	—	f55c0d4c5d3bf1201a902b1f385c222b	Download

Instrument: NextSeq 500 · Layout: PAIRED · Reads: 6504334 · Read length: — · Date: 2022-01-05

File	Format	Size	Reference	Aligner	md5
ERR6196175_1.fastq.gz	FASTQ	155.3 MB	—	—	0cc772a77fd72ad5a38ff4c81b5a1b45	Download
ERR6196175_2.fastq.gz	FASTQ	158.8 MB	—	—	bc7f72e129d7d5494b0b0fa83f87ffa5	Download

Instrument: NextSeq 500 · Layout: PAIRED · Reads: 7231368 · Read length: — · Date: 2022-01-05

File	Format	Size	Reference	Aligner	md5
ERR6196176_1.fastq.gz	FASTQ	168.2 MB	—	—	dabc3797d255a2993159c2a25d85056a	Download
ERR6196176_2.fastq.gz	FASTQ	173.0 MB	—	—	d64bc4be23dd2ce773d7de6f20b5a72b	Download

Instrument: NextSeq 500 · Layout: PAIRED · Reads: 7112590 · Read length: — · Date: 2022-01-05

File	Format	Size	Reference	Aligner	md5
ERR6196177_1.fastq.gz	FASTQ	165.7 MB	—	—	8de32ff2e21bb33bca515189049c848b	Download
ERR6196177_2.fastq.gz	FASTQ	170.3 MB	—	—	d0c994bfae6479f83b0a1034bd57e4bb	Download

Instrument: NextSeq 500 · Layout: SINGLE · Reads: 28933234 · Read length: — · Date: 2022-01-05

File	Format	Size	Reference	Aligner	md5
ERR6196178.fastq.gz	FASTQ	1.0 GB	—	—	3a1a578d30d3dfd297b50e446f56fd7a	Download

Instrument: Illumina HiSeq 4000 · Layout: SINGLE · Reads: 2990875 · Read length: — · Date: 2022-01-05

File	Format	Size	Reference	Aligner	md5
ERR6196180.fastq.gz	FASTQ	113.7 MB	—	—	b266f77ab0012102924de63bcf0048b9	Download

Instrument: NextSeq 500 · Layout: SINGLE · Reads: 28933234 · Read length: — · Date: 2022-01-05

File	Format	Size	Reference	Aligner	md5
ERR6196183.fastq.gz	FASTQ	1.0 GB	—	—	1da08c153023edfa6d25a0ecdb9cd715	Download

Instrument: NextSeq 500 · Layout: SINGLE · Reads: 1758290 · Read length: — · Date: 2022-01-05

File	Format	Size	Reference	Aligner	md5
ERR6196188.fastq.gz	FASTQ	76.2 MB	—	—	fc6659e8adc00d124a68b85e5cf2fb06	Download

Instrument: NextSeq 500 · Layout: PAIRED · Reads: 7783304 · Read length: — · Date: 2022-01-05

File	Format	Size	Reference	Aligner	md5
ERR6196170_1.fastq.gz	FASTQ	170.0 MB	—	—	54892d6e6ca614d7904d8790b2a8875c	Download
ERR6196170_2.fastq.gz	FASTQ	176.9 MB	—	—	b565aeba85461fe264e4ddf5ab2ef488	Download

Instrument: NextSeq 500 · Layout: PAIRED · Reads: 7705260 · Read length: — · Date: 2022-01-05

File	Format	Size	Reference	Aligner	md5
ERR6196172_1.fastq.gz	FASTQ	172.2 MB	—	—	722315a0068729e5ac61deb5f274ed0b	Download
ERR6196172_2.fastq.gz	FASTQ	179.2 MB	—	—	d7d9bf01ff955a7b0c0d2092394766e6	Download

Instrument: NextSeq 500 · Layout: PAIRED · Reads: 7793882 · Read length: — · Date: 2022-01-05

File	Format	Size	Reference	Aligner	md5
ERR6196173_1.fastq.gz	FASTQ	173.8 MB	—	—	d08abc0a3814e235ca663c79d87287d2	Download
ERR6196173_2.fastq.gz	FASTQ	181.7 MB	—	—	48a4a7a7ab703bc45654f84bcd376b61	Download

Instrument: NextSeq 500 · Layout: PAIRED · Reads: 6806302 · Read length: — · Date: 2022-01-05

File	Format	Size	Reference	Aligner	md5
ERR6196174_1.fastq.gz	FASTQ	160.6 MB	—	—	f219aaa0c1f78abb01e26e3768a1524a	Download
ERR6196174_2.fastq.gz	FASTQ	165.3 MB	—	—	13878728bd31d4a8a8ef201637f49320	Download

Instrument: NextSeq 500 · Layout: SINGLE · Reads: 1807305 · Read length: — · Date: 2022-01-05

File	Format	Size	Reference	Aligner	md5
ERR6196185.fastq.gz	FASTQ	76.6 MB	—	—	5f76d9bcdf9ffb66ad060f383784f48b	Download

Instrument: NextSeq 500 · Layout: SINGLE · Reads: 1766595 · Read length: — · Date: 2022-01-05

File	Format	Size	Reference	Aligner	md5
ERR6196186.fastq.gz	FASTQ	74.7 MB	—	—	e2171e3b307b525ee97f5bb3ca8fc2aa	Download

Instrument: NextSeq 500 · Layout: SINGLE · Reads: 1798600 · Read length: — · Date: 2022-01-05

File	Format	Size	Reference	Aligner	md5
ERR6196187.fastq.gz	FASTQ	78.4 MB	—	—	50e9e7868b6d4a270cc00c35234715f5	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.