SAMEA7600840

EXTERNAL

Sample

Accession

SAMEA7600840

Alias

GBVPO

Sex

Female

Center

CNRS UMR 5288

Description

Ancient Human individual from the 'Grotte Basse de la Vigne Perdue' cave

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway U5b3

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
U
chrM:10890A>G, chrM:11731A>G, chrM:11795G>A
U5
chrM:13040T>C, chrM:15693C>T
U5a'b
chrM:2620T>C, chrM:8900G>A
U5b
chrM:13605T>C, chrM:16142C>T, chrM:7191A>G
U5b3
chrM:6649G>A

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 2207810 · Read length: — · Date: 2021-01-13

File	Format	Size	Reference	Aligner	md5
ERR4863317_1.fastq.gz	FASTQ	65.5 MB	—	—	f1aa73180daaa60bff7ff5afd5a53bc4	Download
ERR4863317_2.fastq.gz	FASTQ	78.7 MB	—	—	2014bdfa0754f246a9d68e89967880ca	Download

Instrument: Illumina NovaSeq 6000 · Layout: SINGLE · Reads: 39467872 · Read length: — · Date: 2021-02-13

File	Format	Size	Reference	Aligner	md5
ERR5295850.fastq.gz	FASTQ	1.4 GB	—	—	5e1f6d8f010bfda2ac5f949a563f7e18	Download

Instrument: Illumina MiniSeq · Layout: PAIRED · Reads: 240770 · Read length: — · Date: 2021-01-13

File	Format	Size	Reference	Aligner	md5
ERR4863318_1.fastq.gz	FASTQ	5.3 MB	—	—	996612758466b9b58031725353cde063	Download
ERR4863318_2.fastq.gz	FASTQ	5.5 MB	—	—	4123e7ed9c88a2d80805fcabc4c59077	Download

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 4121168 · Read length: — · Date: 2021-01-13

File	Format	Size	Reference	Aligner	md5
ERR4863319_1.fastq.gz	FASTQ	113.7 MB	—	—	68110a97077e3a1131d5a325e55fb108	Download
ERR4863319_2.fastq.gz	FASTQ	136.4 MB	—	—	ff2e6311d640240214dc27057f4b184d	Download

Instrument: Illumina MiniSeq · Layout: PAIRED · Reads: 174716 · Read length: — · Date: 2021-01-13

File	Format	Size	Reference	Aligner	md5
ERR4863320_1.fastq.gz	FASTQ	3.9 MB	—	—	a0e3ef87db5b5a01304f9dfe3722b67e	Download
ERR4863320_2.fastq.gz	FASTQ	4.0 MB	—	—	d3c85aa882b293ef04853b1806b26bbe	Download

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 1974440 · Read length: — · Date: 2021-01-13

File	Format	Size	Reference	Aligner	md5
ERR4863316_1.fastq.gz	FASTQ	54.5 MB	—	—	4e79aef155a64c5a8502bd23bf228ca8	Download
ERR4863316_2.fastq.gz	FASTQ	68.3 MB	—	—	ba8aa6048968d79d452de55b369287f8	Download

Instrument: Illumina NovaSeq 6000 · Layout: SINGLE · Reads: 23895594 · Read length: — · Date: 2021-02-13

File	Format	Size	Reference	Aligner	md5
ERR5295849.fastq.gz	FASTQ	848.8 MB	—	—	9691eeadbf2abea1795d2629d0d4755d	Download

Instrument: Illumina MiniSeq · Layout: SINGLE · Reads: 1149621 · Read length: — · Date: 2021-02-13

File	Format	Size	Reference	Aligner	md5
ERR5295851.fastq.gz	FASTQ	43.2 MB	—	—	f00bbe163c68e5a41987bb962b31261f	Download

Instrument: Illumina NovaSeq 6000 · Layout: SINGLE · Reads: 34162744 · Read length: — · Date: 2021-02-13

File	Format	Size	Reference	Aligner	md5
ERR5295852.fastq.gz	FASTQ	1.2 GB	—	—	7d3456ea3b7800d38de8a6b3f3ad6721	Download

Instrument: Illumina MiniSeq · Layout: SINGLE · Reads: 1145488 · Read length: — · Date: 2021-02-13

File	Format	Size	Reference	Aligner	md5
ERR5295853.fastq.gz	FASTQ	40.8 MB	—	—	a5e7e02d3424b1d804f38215e57d5f6e	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.