SAMEA7600839

EXTERNAL

Sample

Accession

SAMEA7600839

Alias

GBVPL

Sex

Female

Center

CNRS UMR 5288

Description

Ancient Human individual from the 'Grotte Basse de la Vigne Perdue' cave

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway J1c

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
R2'JT
JT
chrM:10674A>G, chrM:14875C>A, chrM:15549T>C, chrM:3639T>C
J
chrM:12035A>G, chrM:13131G>A, chrM:15492C>T, chrM:15942C>T, chrM:16287C>T, chrM:16482T>C, chrM:9821A>G
J1
chrM:16455C>T, chrM:2434G>A
J1c
chrM:14221T>C

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina MiniSeq · Layout: PAIRED · Reads: 144936 · Read length: — · Date: 2021-01-13

File	Format	Size	Reference	Aligner	md5
ERR4863313_1.fastq.gz	FASTQ	3.2 MB	—	—	3a88827c409ef85f1a9c6e841b929ebb	Download
ERR4863313_2.fastq.gz	FASTQ	3.5 MB	—	—	74970ee86f1c8b90e6b890b1be61dddc	Download

Instrument: Illumina MiniSeq · Layout: PAIRED · Reads: 253570 · Read length: — · Date: 2021-01-13

File	Format	Size	Reference	Aligner	md5
ERR4863315_1.fastq.gz	FASTQ	5.7 MB	—	—	0a23f8a0b3afa95d291de570f68dbb1e	Download
ERR4863315_2.fastq.gz	FASTQ	6.1 MB	—	—	4a2d6f7248582204b33586c743cef677	Download

Instrument: Illumina MiniSeq · Layout: SINGLE · Reads: 545118 · Read length: — · Date: 2021-02-13

File	Format	Size	Reference	Aligner	md5
ERR5295848.fastq.gz	FASTQ	20.5 MB	—	—	75bde7b3d88caf054397001e730f58a9	Download

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 13593740 · Read length: — · Date: 2021-01-13

File	Format	Size	Reference	Aligner	md5
ERR4863312_1.fastq.gz	FASTQ	451.0 MB	—	—	5c253bc3df1bb956ad0dbcb691d76c63	Download
ERR4863312_2.fastq.gz	FASTQ	548.4 MB	—	—	339bebafa63cc3d56f4f535161c9e6d0	Download

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 4075634 · Read length: — · Date: 2021-01-13

File	Format	Size	Reference	Aligner	md5
ERR4863314_1.fastq.gz	FASTQ	131.8 MB	—	—	3c5dc31a8c375765819b98b2d25713da	Download
ERR4863314_2.fastq.gz	FASTQ	154.6 MB	—	—	0d355be85375349c0ca285b2a5947845	Download

Instrument: Illumina NovaSeq 6000 · Layout: SINGLE · Reads: 93200880 · Read length: — · Date: 2021-02-13

File	Format	Size	Reference	Aligner	md5
ERR5295844.fastq.gz	FASTQ	3.8 GB	—	—	db9060b0adc2ec3eea7a1ecbfd68f400	Download

Instrument: Illumina NovaSeq 6000 · Layout: SINGLE · Reads: 79034350 · Read length: — · Date: 2021-02-13

File	Format	Size	Reference	Aligner	md5
ERR5295845.fastq.gz	FASTQ	3.2 GB	—	—	b475e4101b0b06b1ee808a31e91b88c5	Download

Instrument: Illumina MiniSeq · Layout: SINGLE · Reads: 267649 · Read length: — · Date: 2021-02-13

File	Format	Size	Reference	Aligner	md5
ERR5295846.fastq.gz	FASTQ	10.2 MB	—	—	2850c1f1af5093e9fff055d5ba686a4e	Download

Instrument: Illumina NovaSeq 6000 · Layout: SINGLE · Reads: 19044877 · Read length: — · Date: 2021-02-13

File	Format	Size	Reference	Aligner	md5
ERR5295847.fastq.gz	FASTQ	796.9 MB	—	—	a699beb768aabdb243e763ed73a6fbf3	Download

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 19720456 · Read length: — · Date: 2021-01-13

File	Format	Size	Reference	Aligner	md5
ERR4863311_1.fastq.gz	FASTQ	629.0 MB	—	—	97babd95eee991685f37c507b5e48dea	Download
ERR4863311_2.fastq.gz	FASTQ	767.5 MB	—	—	c2d14b7b1cbbf58815b45f1d21951638	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.